In Silico Tools
- : A Visualization tool for protein alignments. 3D structure is required
- : linear epitope prediction available at the IEDB analysis resource webpage for b cells antibody epitope prediction
- : Easyfig is a Python application for creating linear comparison figures of multiple genomic loci with an easy-to-use graphical user interface (GUI)
- : Transform FAST files into a single file by eliminating the spaces
- : Multipurpose genomic toolbox
- : in silico tool used for molecular modelling chemical structures in 3-dimensions. This tool has to be downloaded
- : Mauve is a system for constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion
- : MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools
- : Annotation tool for bacteriophage genomes
- : Determine regulons and binding boxes
- : Predict eukaryotic and bacteria promoter regions
- : interactive protein feature visualization. It is useful in visualizing the sequence, topology and annotations of individual proteins
- : Multipurpose protein analysis toolbox
- : Subcellular localization of bacterial proteins.
- : Annotation tool for bacterial genomes. Could be utilized for bacteriophages but is not recommended.
- : Tool to determine the best reference gene for qPCR assays
- : vaccine target prediction and analysis system based on the principle of reverse vaccinology. It is used to predict subcellular localization, adhesin probability and trans-membrane helices necessary in the characterization of proteins that can be used as potential vaccine candidates
- internally developed program in the Vaxign database that can be used to predict T cell epitopes binding to MHC I and II based on the reverse vaccinology approach
- : An interactive tool for comparing lists with Venn's diagrams
- : Viruses topics